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1. Alberti S, Trerotola M, Emerson A, Rossi E An automated approach to the in-silico identification of chimeric mRNAs Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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2. Ambesi-Impiombato A, Bansal M, Rispoli R, Liò P, Di Bernardo D TFBSs prediction by integration of genomic, evolutionary, and gene expression data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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3. Angeletti M, Baldoncini A, Cannata N, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E, Piergallini R Orion: a spatial Multi Agent System framework for Computational Cellular Dynamics of metabolic pathways Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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4. Angeletti M, Bartocci E, Merelli E A workflow for an orthology-based prediction of protein-protein interaction Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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5. Annese V, Latiano A, Palmieri O, D'Addabbo A, Maglietta R, Liuni S, Pesole G, Ancona N Multiple Single Nucleotide Polymorphisms analysis of candidate genes in Inflammatory Bowel Diseases by using RLS classifiers Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational genetics |
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6. Anselmo A, Iacono M, Felice B, Guffanti A, Pesole G Computational detection of cancer-specific splice sites Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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7. Arcangeli C, Gianese G, Paparcone R, Sperandei M, Cantale C, Galeffi P, Rosato V Setting a procedure for in silico evaluation of immunoconjugates for cancer therapy Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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8. Armano G, Manconi A, Vargiu E Automatic Extraction and Classification of Bioinformatics Publications through a MultiAgent System Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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9. Armano G, Saba M, Vargiu E A Graphical Tool for Protein Sequences Analysis Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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10. Attimonelli M, Accetturo M, Jastrzebski JP, Lascaro D, Santamaria M, Zanchetta De Pasquale L HmtDB, the Human Mitochondrial Genomic Resource: developments in 2006 Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Genomics |
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11. Barbarini N, Magni P, Bellazzi R A new approach for the analysis of mass spectrometry data for biomarker discovery Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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12. Bartocci E, Cannata N, Corradini F, Merelli E, Milanesi L, Romano P A multilayer architecture to support bioinformaticians of today and tomorrow Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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13. Bartocci E, Corradini F, Merelli E, Scortichini L BioWMS: a web based Workflow Management System for Bioinformatics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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14. Bartocci E, Merelli E, Möller S A DAS view of agent-based workflows Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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15. Beltrame F, Corradi L, Milanesi L, Papadimitropoulos A, Porro I, Scaglione S, Schenone A, Torterolo L, Viti F A Grid based solution for Management and Analysis of Microarrays in distributed Bone Marrow Stem Cells experiments Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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16. Bernaschi M, Castiglione F, Ferranti A, Gavrila C, Cesareni G Dynamic simulation of protein interaction networks Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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17. Boccia A, Silvestre A, Paolella G Genome-wide prediction of PCR products based on termodynamic parameters Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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18. Bosotti R, Locatelli G, Healy S, Scacheri E, Calogero RA, Isacchi A Multiplatform approach for robust gene identification Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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19. Brick K, Pizzi E Construction of compositionally biased amino acid substitution matrices to improve annotation of Plasmodium falciparum proteins Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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20. Brilli M, Fondi M, Fani R Analysis of operon genes using a compendium of expression data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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21. Brilli M, Mengoni A, Fani R Network analysis of plasmids encoded proteins Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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22. Brozzi A, Pelicci PG, Luzi L Natural cis-antisense of human tumor suppressor genes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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23. Cannata N, Corradini F, Di Berardini MR, Mariani F, Merelli E, Trivelli M, Ubaldi M Modelling and simulation of the E.coli-Lambda interactions Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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24. Cannata N, Corradini F, La Terza A, Merelli E, Miceli C Modelling of the eukariotic heat-shock response with probabilistic timed automata Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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25. Cannata N, Corradini F, Leoni L, Merelli E, Piersigilli F A resource ontology for bioinformatics Resourceomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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26. Cannataro M, Veltri P MS-Analyzer: Composing and Executing Preprocessing and Data Mining Services for Proteomics Applications Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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27. Capobianco E Entropic Embedding in High-Dimensional Biological Systems Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene networks |
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28. Cappadona S, Pattini L, Levander F, James P, Cerutti S A systematic approach for noise characterization in ESI-Q-TOF spectra Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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29. Caprera A, Cosentino C, Viotti A, Stella A, Milanesi L, Lazzari B ESTuber db: a tool for Tuber borchii EST sequence management Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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30. Capriotti E, Fariselli P, Rossi I, Casadio R Improving the quality of the predictions of protein stability changes upon mutation using a multi-class predictor Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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31. Carreras M, Bosotti R A new interactive and fully automated tool for parsing BLAST output Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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32. Casadio R, Fariselli P, Margara L, Filippo M, Vassura M Improving the selection of close-native protein structures in decoy sets using a graph theory-based approach Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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33. Castrignanò T, D'Onorio De Meo P, Carrabino D, Orsini M, Floris M, Tramontano A The MEPS server for identifying protein conformational epitopes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Combinatorial libraries and drug design |
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34. Chiappori F, Ferrario MG, Gaiji N, Fantucci P Design of Selective Compounds for the Estrogen Receptors: A Molecular Docking and Machine Learning Study Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Combinatorial libraries and drug design |
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35. Chiarugi D, Degano P, Marangoni R A systems biology approach to the functional screening of genomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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36. Chiusano ML, D'Agostino N, Traini A, Raimondo E, Aversano M, Frusciante L An integrated platform for solanaceae genomics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Structural and functional genomics |
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37. Cameron G, Clark D, Beltrame F, Coatrieux JL, Del Hoyo Barbolla E, Martin-Sanchez F, Milanesi L, Tollis Ioannis G, Van der Lei J SYMBiomatics: Synergies in Medical Informatics and Bioinformatics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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38. Cordero F, Saviozzi S, Di Renzo MF, Olivero M, Cirenei N, Calogero RA Microarray cross-platforms differential expression validation Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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39. Corsi C, Ferragina P, Marangoni R The bioPrompt-box: an ontology-based clustering tool for searching in biological databases Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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40. Costantini S, Colonna G, Facchiano AM Amino acid propensities for secondary structures Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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41. Cozzuto L, Petrillo M, Silvestro G, Di Nocera PP, Paolella G Systematic identification of stem-loop containing sequence families in bacterial genomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Structural and functional genomics |
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42. D'Agostino N, Aversano M, Frusciante L, Chiusano ML TOMATEST DB: a database of expressed sequences to mine on Tomato functional genomics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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43. Damasco C, Grassi E, Ala U, Gatti M, Di Cunto F Identification of new putative mitotic genes through coexpression analysis Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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44. Di Camillo B, Toffolo G, Cobelli C Significance analysis of microarray transcript levels in time series experiments Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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45. D'Ursi P, Marino F, Caprera A, Milanesi L, Faioni E, Rovida E 3D-protein C mutation database: integration of structural, functional and clinical data of natural protein C mutants Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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46. Emerson A, Rossi E Immunogrid - The European Virtual Human Immune System Project Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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47. Farina L, Marcatili P, Uva P, Busiello V, Morelli G, Ruberti I Dynamic Regulation of Gene Expression Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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48. Fariselli P, Bartoli L, Calabrese R, Mita DG, Casadio R A computational approach for detecting peptidases and their specific inhibitors at the genome level Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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49. Ferrario MG, Chiappori F, Gaiji N, Fantucci P Alpha and Beta Estrogen Receptors: Molecular Modelling and Conformational Analysis through Molecular Dynamics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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50. Ferraro E, Via A, Ausiello G, Helmer-Citterich M A novel structure-based encoding for machine-learning applied to the prediction of SH3 domain specificity Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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51. Ferrazzi F, Sebastiani P, Kohane IS, Ramoni MF, Bellazzi R Bayesian approaches for reverse engineering of cellular networks: a performance evaluation on simulated data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene networks |
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52. Ferrè F, Clote P, Ausiello G, Via A, Cesareni G, Helmer-Citterich M Mining the human interactome through gene expression time series analysis Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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53. Finocchiaro G, Mancuso FM, Muller H Publime: a new tool for meta-analysis of cancer-related microarray experiments Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Structural and functional genomics |
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54. Finocchiaro G, Parise P, Di Ninni V, Francois S, Carro MS, Muller H Intragenic antisense transcription correlates with long UTRs Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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55. Fogolari F, Pieri L, Bortolussi L, Dovier A A statistical empirical energy function for proteins Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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56. Fondi M, Brilli M, Fani R On the origin and evolution of biosynthetic pathways: integrating microarray data with gene structure and organization Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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57. Fontana P, De Mattè L, Cestaro A, Segala C, Velasco R, Toppo S GORetriever: a novel Gene Ontology annotation tool based on semantic similaritiy for knowledge discovery in database Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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58. Gallimbeni R, Falconi M, Desideri A HServ and SNPly: a software infrastructure and a web agent for linking information on genetic variation Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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59. Gissi C, San Mauro D, Pesole G, Zardoya R Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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60. Horner DS, Pesole G Protein contact prediction with correlated mutation analysis using mixed physiochemical constraints Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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61. Horner DS, Re M, Nasi C, Pesole G Improving the capacity of the CSTMiner algorithm to correctly classify conserved sequences Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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62. Iacono M, Mignone F, Anselmo A, Pesole G ESTissue: A novel method to identify gene expression profile EST based Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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63. Iannelli F, Griggio F, Pesole G, Gissi C Reshaping the mtDNA circle: new insights from four newly sequenced ascidian genomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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64. Lanave C, De Grassi A, Saccone C Comparative Genomics of OXPHOS gene families Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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65. Maglietta R, D'Addabbo A, Piepoli A, Perri F, Liuni S, Pesole G, Ancona N Selection and ranking of genes relevant for cancer diagnosis based on the classification ability of their expression pattern Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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66. Malusa F, Gonzalez Couto E, Rossi M, Bakker A, Kremer A, Terstappen GC The Wnt Pathway as in silico disease model for neuro-oncology Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene networks |
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67. Marabotti A, Festa M, D'Acierno A, Facchiano A GALT-Prot database: a database of the structural features of GALT enzyme and its mutations Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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68. Marino F, Morra G, D'Ursi P, Salvi E, Milanesi L, Faioni E, Rovida E Molecular dynamics and docking simulation of the G216D mutation in the catalytic domain of activated protein C Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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69. Masseroli M, Bellistri E, Pinciroli F Logistic regression of controlled functional annotations of classified genes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Structural and functional genomics |
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70. Masseroli M, Franceschini A, Maffezzoli A, Pinciroli F Genomic annotation and statistical analysis of protein families and domains for functional investigation of gene lists Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Genomics |
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71. Menconi G, Dionisi F, Marangoni R Extraction of recurrent motifs synthetic genomic sequences via dictionary-based compression Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational genetics |
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72. Mereghetti P, Papaleo E, Fantucci P, Tiranti V, Zeviani M, Mineri R, De Gioia L Evaluation of protein models quality using neural networks. Application to the ETHE1 protein Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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73. Merelli I, D'Agostino D, Clematis A, Milanesi L Analysis system for Protein Surface Recognition Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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74. Mignone F, Re M, Horner DS, Pesole G A new strategy to identify novel genes and gene isoforms: whole genome comparison of human and mouse Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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75. Milanesi L, Alfieri R, Merelli I Developement of a data mining system for human cell cycle data analysis Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene networks |
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76. Milanesi L, Andreas G, Arlandini C, Beltrame F, Bishop C, Breton V, Ernest P, Jacq N, Legre Y, Liò P, Liuni S, Mazzuccato M, Maggi G, Meloni G, Merelli I, Morra G, Orro A, Porro I, Sanger M, Shuai S, Trombetti G BioinfoGRID: EU Bioinfomatics GRID Project Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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77. Mittempergher L, Picelli S, Feltrin E, Colluto L, Nofrate V, Caldara F, Millino C, Campanaro S, Valle G Contribution to the ontology and system biology of muscle genes and application to microarray expression studies Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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78. Mizugushi K, Sele M, Cubellis MV Environment specific substitution tables for thermophilic proteins Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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79. Morra G, Milanesi L Molecular dynamics simulations of TBP complexed with diverse TATA variants Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics |
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80. Mosca R, Schneider TR Alignment of Homologous Protein Structures in the Presence of Domain Motions Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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81. Muselli M, Romeo F, Pfeffer U Clustering techniques for classification of splice sites of human exons Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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82. Mutarelli M, Scafoglio C, Cicatiello L, Colonna G, Facchiano A, Weisz A Getting the most out of comparative microarray data analysis: analysis of the estrogen-responsive transcriptome from breast cancer cells with four different microarray platforms Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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83. Nicodemi M, Prisco A A computer model of X-inactivation Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene expression |
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84. Orro A, Armano G, Vargiu E, Milanesi L FunGenAgent: An Agent-Based Approach for Workflow Composition in Homology Functional Genomics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Genomics |
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85. Pandini A, Mauri G, Bonati L A new procedure to detect similarities among distant homologous proteins based on the comparison of domain flexibilities Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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86. Papaleo E, Pandini A, De Gioia L, Bonati L A fast conformational sampling approach to investigate enzymatic cold-adaptation mechanisms Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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87. Papaleo E, Riccardi L, Pasi M, Gonella Diaza R, Smalas AO, Brandsdal BO, Fantucci P, De Gioia L Comparative molecular dynamics simulations of homologous enzymes to investigate enzymatic cold-adaptation: a family-centred point of view Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Protein structure |
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88. Paparcone R, Casilli R, Melchionna S, Marongiu A, Palazzari P, Rosato V IMAGE: a new tool for the discovery of Transcription Factors binding sites Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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89. Pavesi G, Valentini G, Mauri G, Pesole G Motif based classification of coexpressed genes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Recognition of genes and regulatory elements |
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90. Peluso D, Via A, Ausiello G, Helmer-Citterich M Mapping OMIM mutated residues on PDB protein structures Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Structural and functional genomics |
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91. Persico M, Kiemer L, Cesareni G Assembling the Yeast Interactome Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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92. Piccolis M, Medico E The genomic signature for in vitro-induced invasive growth is enriched in genes correlated with human cancer aggressiveness Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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93. Pizzi E, Bultrini E, Silvestrini F, Alano P Genomic analysis of gene structure and expression of Plasmodium falciparum rifins Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Genomics |
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94. Pozzoli U, Menozzi G, Cereda M, Comi GP, Sironi M Expression levels and gene function influence transposon occurrence in mammalian introns Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecolar evolution |
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95. Raimondo E, Chiusano ML Pattern Discovery: a web based interface for exhaustive analyses on multiple biological sequences Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis |
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96. Rambaldi D, Felice B, Praz V, Bucher P, Guffanti A Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Microarray design and data analysis |
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97. Rampone S, Aloisio A, Izzo V FPGA implementation of a greedy scheme for Bioinformatics applications Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational genetics |
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98. Remondini D, Neretti N, Milanesi L, Tatar M, Sedivy JM, Franceschi C, Castellani GC Correlation analysis of gene expression time series at multiple scales: from the entire genome to metabolic and signalling pathways Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology |
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99. Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L Biowep: a workflow enactment portal for bioinformatics applications Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea |
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100. Sacchi L, Larizza C, Magni P, Bellazzi R Precedence temporal networks for the representation of temporal relationships in gene expression data Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Gene networks |